TY - JOUR
T1 - Mechanistic QSAR analysis to predict the binding affinity of diverse heterocycles as selective cannabinoid 2 receptor inhibitor
AU - Jawarkar, Rahul D.
AU - Zaki, Magdi E.A.
AU - Al-Hussain, Sami A.
AU - Abdullah Alzahrani, Abdullah Yahya
AU - Ming, Long Chiau
AU - Samad, Abdul
AU - Rashid, Summya
AU - Mali, Suraj
AU - Elossaily, Gehan M.
N1 - Publisher Copyright:
© 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
PY - 2023
Y1 - 2023
N2 - CB2R are fascinating targets for neuropathic pain and mood disorders because of their improved biological characteristics. Experimental data on 1296 cannabinoid-2 receptor inhibitors with different structural properties were used to develop a QSAR model following OECD guidelines. This study selected the best-predicted model (80:20 splitting ratio) with fitting parameters, such as R2 :0.78; F:623.6, Internal validation parameters, such as Q2Loo :0.78; CCCcv: 0.87 and external validation parameters, such as R2ext :0.77; Q2F1 :0.7730; Q2F2 :0.7730; Q2F3 :0.76; CCCext :0.87. Following this, another QSAR model was developed by using a 50:50 split ratio for thetraining and the prediction sets, which were then swapped to evaluate the robustness of the built QSAR model by the 50:50 ratio, which also gives a deeper understanding of the chemical space. In addition, we have confirmed the QSAR result with pharmacophore modelling, and supported by molecular docking, MD simulation, MMGBSA and ADME studies. Thus, this work may enable cannabinoid 2 receptor inhibsitor development.
AB - CB2R are fascinating targets for neuropathic pain and mood disorders because of their improved biological characteristics. Experimental data on 1296 cannabinoid-2 receptor inhibitors with different structural properties were used to develop a QSAR model following OECD guidelines. This study selected the best-predicted model (80:20 splitting ratio) with fitting parameters, such as R2 :0.78; F:623.6, Internal validation parameters, such as Q2Loo :0.78; CCCcv: 0.87 and external validation parameters, such as R2ext :0.77; Q2F1 :0.7730; Q2F2 :0.7730; Q2F3 :0.76; CCCext :0.87. Following this, another QSAR model was developed by using a 50:50 split ratio for thetraining and the prediction sets, which were then swapped to evaluate the robustness of the built QSAR model by the 50:50 ratio, which also gives a deeper understanding of the chemical space. In addition, we have confirmed the QSAR result with pharmacophore modelling, and supported by molecular docking, MD simulation, MMGBSA and ADME studies. Thus, this work may enable cannabinoid 2 receptor inhibsitor development.
KW - Cannabinoid 2 receptor
KW - GA-MLR
KW - MMGBSA
KW - Molecular dynamic simulation
KW - pharmacophore modeling
KW - QSAR
UR - http://www.scopus.com/inward/record.url?scp=85173653352&partnerID=8YFLogxK
U2 - 10.1080/16583655.2023.2265104
DO - 10.1080/16583655.2023.2265104
M3 - Article
AN - SCOPUS:85173653352
SN - 1658-3655
VL - 17
JO - Journal of Taibah University for Science
JF - Journal of Taibah University for Science
IS - 1
M1 - 2265104
ER -